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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
snATAC-seq
47
WGBS
42
ATAC-seq
3
Hi-C
Assay category
177
Transcription
47
DNA methylation
42
DNA accessibility
3
3D chromatin structure
Date released
113
May, 2022
76
February, 2023
59
September, 2020
18
February, 2021
August, 2020
3
October, 2022
Available data
135
fastq
132
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
bigWig
3
cool
3
hic
Organism
269
Homo sapiens
Biosample type
269
primary cell
Organ
145
epithelium
145
pancreas
Project
269
HPAP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
3910
AMP-T2D consortium
325
Kyle Gaulton, UCSD
269
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
assay_title!
snATAC-seq
month_released!
August, 2020
BIOSAMPLE
ASSAY
269 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
42
31
24
1
Langerhans cell
85
pancreatic beta cell
11
16
14
1
exocrine cell
39
pancreatic acinar cell
4
1
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