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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
snATAC-seq
Assay category
68
Transcription
3
DNA accessibility
Date released
57
August, 2021
6
May, 2022
5
February, 2021
3
February, 2023
1
October, 2022
Available data
3232
bam
3039
bigWig
1737
bed narrowPeak
1542
tsv
1237
fastq
992
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
257
bed bed3+
132
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
71
Homo sapiens
Biosample type
68
tissue
3
in vitro differentiated cells
1
cell line
Organ
bone element
62
kidney
6
pancreas
4
skeleton
Project
72
AMP
Genome assembly (visualization)
3
hg19
Lab
57
Katalin Susztak, Upenn
6
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
1
inconsistent ontology term
assay_title!
snATAC-seq
month_released!
December, 2017
organ_slims!
bone element
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
tissue
kidney
49
13
islet of Langerhans
6
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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