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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
93
total RNA-seq
34
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
single cell RNA-seq
Assay category
103
DNA accessibility
94
Transcription
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
688
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
Available data
111
fastq
95
bed narrowPeak
34
bam
33
bigWig
30
bigBed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
Organism
237
Homo sapiens
Biosample type
100
tissue
88
primary cell
34
cell line
16
in vitro differentiated cells
Organ
54
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
27
blood
27
bodily fluid
14
connective tissue
8
bone element
8
skeleton
7
spleen
1
adipose tissue
1
brain
1
liver
Project
141
AMP
76
HPAP
21
T1D
Genome assembly (visualization)
75
hg19
65
GRCh38
Lab
138
AMP-T2D consortium
76
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
1
inconsistent control
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
238 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
Hi-C
single cell RNA-seq
tissue
coronary artery
35
retina
15
2
islet of Langerhans
11
5
pigmented layer of retina
12
2
spleen
7
+ See 7 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
cell line
GM12878
27
EndoC_BH1
3
2
1
HepG2
1
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
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