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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
total RNA-seq
84
RNA microarray
33
ChIP-seq
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
568
Transcription
33
DNA binding
22
DNA accessibility
6
DNA methylation
Target of assay
19
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
688
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
Available data
602
bam
577
bigWig
564
tsv
89
txt
48
fastq
44
bed narrowPeak
21
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
718
Homo sapiens
Biosample type
552
tissue
119
cell line
26
in vitro differentiated cells
21
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
18
blood
18
bodily fluid
8
kidney
8
liver
8
skeleton
7
spleen
6
limb
Project
700
AMP
18
HPAP
Genome assembly (visualization)
600
hg19
594
GRCh38
Lab
700
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
718 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
GM12878
18
HepG2
5
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
Langerhans cell
12
pancreatic alpha cell
6
osteoblast
1
1
1
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