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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ATAC-seq
41
WGBS
34
single cell RNA-seq
30
total RNA-seq
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
79
DNA accessibility
64
Transcription
41
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
688
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
Available data
113
zippedFastqFolder
40
bed narrowPeak
30
bam
25
bigWig
24
fastq
6
txt
4
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
194
Homo sapiens
Biosample type
119
primary cell
69
tissue
6
cell line
Organ
114
pancreas
86
epithelium
40
liver
6
connective tissue
1
musculature of body
Project
113
HPAP
81
AMP
Genome assembly (visualization)
44
hg19
6
GRCh38
Lab
113
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
MeRIP-seq
DNase-seq
primary cell
pancreatic alpha cell
22
25
Langerhans cell
33
pancreatic beta cell
13
16
osteoblast
1
4
1
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
4
skeletal muscle tissue
1
cell line
EndoC_BH1
6
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