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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
DNA binding
34
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
1
January, 2018
1
May, 2022
Available data
41
bigWig
40
bam
33
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
56
Homo sapiens
Biosample type
52
tissue
4
primary cell
Organ
717
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
296
kidney
259
heart
239
liver
159
bone element
134
vasculature
blood vessel
107
artery
68
brain
56
eye
56
limb
56
musculature of body
18
ureter
16
skeleton
15
embryo
10
lung
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
45
hg19
40
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
blood vessel
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
56 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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