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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
31
ChIP-seq
7
ATAC-seq
4
Hi-C
2
pCHi-C
2
total RNA-seq
1
WGBS
Assay category
41
DNA accessibility
31
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
25
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
32
June, 2019
27
October, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
1
May, 2021
Available data
72
bam
65
bed narrowPeak
60
bigWig
58
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
81
Homo sapiens
Biosample type
81
tissue
Organ
935
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
348
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
1
T1D
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
80
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
nerve
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
tissue
tibial artery
2
23
1
1
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
thymus
2
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