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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
34
ATAC-seq
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
115
Transcription
34
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
24
May, 2022
21
February, 2023
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
325
Homo sapiens
Biosample type
231
primary cell
47
in vitro differentiated cells
42
tissue
5
cell line
Organ
41
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
218
T1D
107
AMP
Genome assembly (visualization)
238
hg19
180
GRCh38
Lab
3894
AMP-T2D consortium
325
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
skeleton
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
11
29
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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