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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
DNA binding
193
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
March, 2020
2
February, 2021
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
190
bigWig
174
tsv
171
bam
28
bed narrowPeak
13
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
bed bed3
1
csv
1
hdf5
1
vcf
Organism
238
Homo sapiens
Biosample type
206
tissue
22
cell line
10
primary cell
Organ
717
pancreas
525
connective tissue
418
adipose tissue
395
epithelium
296
kidney
259
heart
238
liver
155
bone element
134
vasculature
131
blood vessel
107
artery
67
brain
56
eye
56
limb
56
musculature of body
18
ureter
15
embryo
12
skeleton
10
lung
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
195
hg19
170
GRCh38
Lab
185
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
assay_slims!
DNA binding
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
14
1
2
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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