Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
74
ChIP-seq
3
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
74
DNA binding
5
DNA accessibility
Target of assay
52
histone
52
histone modification
28
narrow histone mark
24
broad histone mark
15
control
7
transcription factor
2
RNA binding protein
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
168
bam
168
fastq
159
bigWig
89
tsv
49
bed narrowPeak
19
bed bed3+
17
bigBed narrowPeak
16
tagAlign
12
bed broadPeak
Organism
161
Homo sapiens
Biosample type
127
tissue
41
primary cell
Organ
168
pancreas
72
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
168
AMP
Genome assembly (visualization)
153
hg19
152
GRCh38
Lab
168
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
168 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
22
1
1
pancreas
14
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
Download