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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
14
total RNA-seq
1
ATAC-seq
1
GRO-seq
1
pCHi-C
Assay category
23
DNA binding
14
Transcription
1
DNA accessibility
Target of assay
13
histone
13
histone modification
9
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
2
October, 2019
1
January, 2018
1
March, 2020
Available data
37
bam
30
bigWig
27
fastq
15
bed narrowPeak
15
tsv
3
bed bed3+
1
tagAlign
Organism
40
Homo sapiens
Biosample type
29
in vitro differentiated cells
8
cell line
3
tissue
Organ
935
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
348
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
30
GRCh38
30
hg19
1
hg18
Lab
40
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
tissue
islet of Langerhans
1
pituitary gland
1
sigmoid colon
1
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