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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
9
ATAC-seq
7
total RNA-seq
5
DNase-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
86
DNA binding
14
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
106
bam
75
bigWig
74
bed narrowPeak
65
bigBed narrowPeak
24
fastq
8
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
115
Homo sapiens
Biosample type
115
tissue
Organ
931
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
267
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
61
blood
61
bodily fluid
54
eye
52
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
80
GRCh38
78
hg19
Lab
115
AMP-T2D consortium
assay_title!
snATAC-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
muscle of leg
7
1
gastrocnemius medialis
1
4
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