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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
83
DNA binding
46
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
6
November, 2018
5
July, 2019
3
February, 2020
1
March, 2020
1
October, 2017
Available data
135
bam
104
bigWig
103
bed narrowPeak
94
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
21
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
144
Homo sapiens
Biosample type
144
tissue
Organ
935
pancreas
789
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
348
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
22
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
Genome assembly (visualization)
109
GRCh38
107
hg19
Lab
144
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
target.investigated_as!
other context
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
17
1
1
2
1
muscle of leg
7
13
1
muscle of arm
17
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