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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
53
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
1
RRBS
Assay category
402
Transcription
53
DNA binding
8
DNA accessibility
7
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
37
August, 2017
23
October, 2018
14
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
443
bam
426
bigWig
402
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
4
tagAlign
3
bed bedMethyl
3
bed broadPeak
3
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
472
Homo sapiens
Biosample type
469
tissue
3
primary cell
1
in vitro differentiated cells
Organ
857
pancreas
749
liver
640
connective tissue
480
epithelium
471
adipose tissue
336
heart
333
kidney
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
75
musculature of body
61
blood
61
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
18
ureter
16
skeleton
13
vein
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
473
AMP
Genome assembly (visualization)
428
hg19
425
GRCh38
Lab
473
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
snATAC-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
473 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
subcutaneous abdominal adipose tissue
16
3
white adipose tissue
12
+ See 3 more…
primary cell
mesenchymal stem cell of adipose
1
1
pericardium fibroblast
1
in vitro differentiated cells
white fat cell
1
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