Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
11
DNA accessibility
Target of assay
88
histone
histone modification
44
broad histone mark
44
narrow histone mark
Date released
68
May, 2021
45
May, 2020
21
February, 2023
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
Organism
138
Homo sapiens
Biosample type
112
primary cell
19
tissue
7
cell line
Organ
20
pancreas
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3350
AMP
276
HPAP
138
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
134
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
assay_title!
snATAC-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
138 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
tissue
islet of Langerhans
7
11
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
Download