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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
88
ChIP-seq
snATAC-seq
60
ATAC-seq
41
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
244
Transcription
88
DNA binding
60
DNA accessibility
41
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
113
May, 2022
102
May, 2021
97
February, 2023
59
September, 2020
47
September, 2023
12
February, 2021
9
April, 2020
7
August, 2020
5
March, 2020
5
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
142
fastq
132
zippedFastqFolder
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
455
Homo sapiens
Biosample type
371
primary cell
77
tissue
9
cell line
2
stem cell
Organ
168
pancreas
148
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
270
HPAP
128
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
270
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
6
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
audit script error
3
inconsistent ontology term
assay_title!
snDrop-seq
snATAC-seq
award.project!
AMP
files.file_type!
tsv
BIOSAMPLE
ASSAY
459 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
pancreatic alpha cell
42
29
25
1
Langerhans cell
85
monocyte
84
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 16 more…
tissue
kidney
47
islet of Langerhans
7
2
11
lung
9
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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