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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
18
July, 2019
4
August, 2021
Available data
18
bam
18
bigWig
18
tsv
2
bed bed3+
Organism
22
Homo sapiens
Biosample type
16
tissue
2
cell line
2
in vitro differentiated cells
2
primary cell
Organ
5
connective tissue
4
brain
4
pancreas
3
adipose tissue
3
liver
2
epithelium
2
musculature of body
1
heart
1
kidney
Project
22
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
20
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
22 results
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small RNA-seq
Capture-C
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 9 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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