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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
963
histone modification
962
histone
485
narrow histone mark
476
broad histone mark
451
transcription factor
343
control
111
RNA binding protein
88
recombinant protein
27
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
5
November, 2018
3
August, 2017
1
December, 2017
1
December, 2018
Available data
27
bam
27
bed narrowPeak
27
bigWig
27
fastq
25
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
27
Homo sapiens
Biosample type
23
cell line
3
in vitro differentiated cells
1
primary cell
Organ
15
liver
9
blood
9
bodily fluid
2
connective tissue
1
epithelium
Project
27
AMP
Genome assembly (visualization)
27
GRCh38
27
hg19
Lab
27
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent control run_type
assay_title!
snDrop-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
cell line
HepG2
14
GM12878
9
in vitro differentiated cells
adipocyte
2
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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