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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
Assay category
393
DNA binding
Target of assay
770
histone modification
769
histone
469
transcription factor
393
narrow histone mark
375
broad histone mark
308
control
101
RNA binding protein
88
recombinant protein
29
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
63
August, 2017
34
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
15
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
1
October, 2017
Available data
323
bigWig
322
bed narrowPeak
296
bam
126
tagAlign
121
bigBed narrowPeak
64
fastq
20
bed broadPeak
8
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
391
Homo sapiens
Biosample type
320
tissue
primary cell
54
in vitro differentiated cells
18
cell line
1
stem cell
Organ
113
brain
57
liver
39
pancreas
38
heart
29
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
nerve
7
embryo
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
389
AMP
4
T1D
Genome assembly (visualization)
303
GRCh38
294
hg19
Lab
366
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
assay_title!
snDrop-seq
biosample_type!
primary cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
393 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
34
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
hepatocyte
5
pancreatic endoderm
5
+ See 7 more…
cell line
HepG2
8
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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