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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
Assay category
141
DNA binding
Target of assay
295
control
141
histone
141
histone modification
71
narrow histone mark
70
broad histone mark
18
transcription factor
8
RNA binding protein
5
nucleotide modification
1
recombinant protein
Date released
76
August, 2017
24
October, 2019
20
May, 2021
13
November, 2017
6
October, 2017
1
August, 2021
1
December, 2017
Available data
bigWig
599
bed narrowPeak
581
bam
344
bigBed narrowPeak
223
tagAlign
156
fastq
49
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
141
Homo sapiens
Biosample type
106
tissue
34
in vitro differentiated cells
primary cell
1
cell line
Organ
43
connective tissue
30
adipose tissue
21
brain
20
liver
9
pancreas
6
musculature of body
4
gonad
4
ovary
2
eye
1
embryo
1
limb
1
lymph node
Project
141
AMP
Genome assembly (visualization)
3
GRCh38
2
hg19
Lab
121
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
2
missing controlled_by
assay_title!
snDrop-seq
biosample_type!
primary cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
141 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
30
islet of Langerhans
29
liver
20
brain
6
cingulate gyrus
6
+ See 7 more…
in vitro differentiated cells
embryonic stem cell
20
adipocyte
12
neural progenitor cell
1
pancreatic endoderm
1
cell line
Panc1
1
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