Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
36
ChIP-seq
Assay category
151
DNA accessibility
36
DNA binding
Target of assay
25
histone
25
histone modification
13
broad histone mark
12
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
65
February, 2023
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
2516
bigWig
1482
bed narrowPeak
1327
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
187
Homo sapiens
Biosample type
169
tissue
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
187
AMP
Genome assembly (visualization)
99
GRCh38
88
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
biosample_type!
primary cell
files.file_type!
bam
BIOSAMPLE
ASSAY
187 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 6 more…
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
Download