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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
89
total RNA-seq
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
243
DNA binding
89
Transcription
DNA methylation
6
DNA accessibility
Target of assay
161
histone modification
160
histone
93
broad histone mark
66
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
664
February, 2021
397
November, 2017
338
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
80
April, 2019
80
November, 2018
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
59
July, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
224
bigWig
222
bam
222
fastq
109
bed narrowPeak
89
tsv
73
tagAlign
33
bed bed3+
27
bed broadPeak
23
bigBed narrowPeak
1
bigBed broadPeak
Organism
331
Homo sapiens
Biosample type
270
tissue
68
in vitro differentiated cells
primary cell
Organ
147
pancreas
119
connective tissue
51
adipose tissue
50
liver
22
musculature of body
Project
338
AMP
Genome assembly (visualization)
226
hg19
205
GRCh38
Lab
338
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_title!
snDrop-seq
biosample_type!
primary cell
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
338 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
67
1
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