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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
227
DNA accessibility
188
Transcription
185
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
34
October, 2019
31
July, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
August, 2017
1
March, 2020
1
March, 2023
Available data
567
bigWig
551
bam
fastq
270
tsv
262
bed narrowPeak
153
zippedFastqFolder
90
bigBed narrowPeak
88
tagAlign
37
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
678
Homo sapiens
Biosample type
2288
tissue
678
primary cell
239
in vitro differentiated cells
235
cell line
6
stem cell
Organ
168
epithelium
88
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
318
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
401
hg19
307
GRCh38
Lab
283
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
4
audit script error
assay_title!
snDrop-seq
files.file_type!
fastq
month_released!
August, 2017
BIOSAMPLE
ASSAY
678 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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