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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
175
DNA binding
21
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
control
Date released
79
October, 2019
64
November, 2017
25
May, 2019
15
July, 2019
12
February, 2020
10
October, 2017
2
March, 2020
1
February, 2023
Available data
216
bigWig
213
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
208
Homo sapiens
Biosample type
204
tissue
4
primary cell
Organ
872
pancreas
639
connective tissue
620
liver
472
epithelium
464
adipose tissue
343
heart
261
kidney
208
brain
197
vasculature
196
blood vessel
159
bone element
128
artery
69
limb
63
blood
63
bodily fluid
56
eye
44
musculature of body
30
embryo
30
nerve
20
lung
16
skeleton
16
spleen
16
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
208
AMP
Genome assembly (visualization)
168
GRCh38
121
hg19
Lab
208
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_title!
snDrop-seq
files.file_type!
bed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
208 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
20
brain
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
substantia nigra
13
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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