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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
231
ChIP-seq
Assay category
231
DNA binding
Target of assay
159
histone
159
histone modification
107
narrow histone mark
67
control
52
broad histone mark
5
transcription factor
Date released
May, 2021
68
August, 2017
50
May, 2020
49
October, 2019
24
August, 2021
24
November, 2017
8
February, 2021
8
October, 2017
Available data
3115
bam
2866
bigWig
1684
bed narrowPeak
1424
tsv
1358
fastq
bigBed narrowPeak
322
bed broadPeak
308
tagAlign
285
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
230
Homo sapiens
Biosample type
181
tissue
34
in vitro differentiated cells
11
cell line
5
primary cell
Organ
77
liver
67
brain
22
connective tissue
15
musculature of body
10
pancreas
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
231
AMP
Genome assembly (visualization)
112
hg19
80
GRCh38
Lab
231
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_title!
snDrop-seq
files.file_type!
bigBed narrowPeak
month_released!
May, 2021
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
brain
8
cingulate gyrus
8
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cell line
smooth muscle cell of the coronary artery
6
HepG2
3
iPSC derived cell line
2
primary cell
hepatocyte
4
skeletal muscle myoblast
1
See all biosamples
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