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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
6
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
February, 2020
3
March, 2020
1
July, 2019
Available data
180
bam
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
65
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
77
Homo sapiens
Biosample type
60
tissue
10
cell line
7
primary cell
Organ
322
pancreas
223
epithelium
220
kidney
168
liver
166
heart
112
connective tissue
101
bone element
78
vasculature
77
blood vessel
64
adipose tissue
54
artery
54
eye
52
brain
28
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
snDrop-seq
files.file_type!
bigWig
month_released!
February, 2020
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
35
2
aorta
2
4
1
1
1
tibial artery
5
thoracic aorta
4
ascending aorta
3
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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