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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
6
snATAC-seq
4
RRBS
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
81
DNA accessibility
7
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
130
August, 2021
47
September, 2023
14
May, 2023
October, 2019
5
April, 2019
5
February, 2021
4
July, 2019
3
December, 2019
2
March, 2020
1
June, 2019
1
May, 2019
Available data
167
bed narrowPeak
116
bam
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
15
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
212
Homo sapiens
Biosample type
203
tissue
5
primary cell
4
cell line
Organ
313
pancreas
213
epithelium
212
kidney
168
heart
168
liver
113
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
54
brain
51
artery
34
eye
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
14
limb
9
spleen
8
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
165
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
21
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
5
inconsistent ontology term
assay_title!
snDrop-seq
files.file_type!
bigWig
month_released!
October, 2019
BIOSAMPLE
ASSAY
212 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
75
64
49
5
6
1
1
kidney interstitium
1
renal glomerulus
1
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
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