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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
59
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
69
October, 2019
32
June, 2019
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
107
bam
86
bed narrowPeak
85
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
115
Homo sapiens
Biosample type
115
tissue
Organ
937
pancreas
789
liver
684
connective tissue
513
epithelium
491
adipose tissue
369
heart
345
kidney
258
brain
183
vasculature
177
blood vessel
159
bone element
136
artery
115
limb
87
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
91
GRCh38
90
hg19
Lab
115
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
files.file_type!
hic
month_released!
May, 2019
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
1
4
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