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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
39
ATAC-seq
25
DNase-seq
Assay category
214
DNA binding
64
DNA accessibility
Target of assay
205
histone
205
histone modification
107
broad histone mark
98
narrow histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
46
September, 2018
45
June, 2019
33
August, 2017
8
October, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2021
2
November, 2020
1
February, 2021
Available data
589
bigWig
582
bam
406
fastq
278
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
278
Homo sapiens
Biosample type
884
tissue
392
cell line
278
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
106
epithelium
68
pancreas
22
kidney
21
vasculature
blood vessel
17
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
194
AMP
84
T1D
Genome assembly (visualization)
272
hg19
245
GRCh38
Lab
164
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snDrop-seq
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
278 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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