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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
74
ATAC-seq
34
DNase-seq
Assay category
116
DNA binding
108
DNA accessibility
Target of assay
98
histone
98
histone modification
57
broad histone mark
41
narrow histone mark
18
transcription factor
12
RNA binding protein
Date released
62
February, 2023
47
April, 2019
40
May, 2024
39
June, 2019
15
May, 2019
12
February, 2021
5
October, 2019
4
July, 2019
Available data
230
bigWig
224
bed narrowPeak
218
bam
173
tsv
100
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
224
Homo sapiens
Biosample type
203
tissue
12
cell line
9
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
224
AMP
Genome assembly (visualization)
196
GRCh38
146
hg19
Lab
184
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
coronary artery
3
36
2
left cardiac atrium
40
1
heart left ventricle
29
2
3
heart
12
18
retina
15
3
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
cardiac fibroblast
3
3
retinal pigment epithelial cell
2
1
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