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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
147
ChIP-seq
69
single cell RNA-seq
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
147
DNA binding
10
DNA methylation
5
DNA accessibility
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
165
August, 2017
58
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
16
September, 2020
7
November, 2018
6
February, 2021
6
May, 2022
6
September, 2017
3
August, 2018
1
June, 2018
Available data
624
bam
582
bigWig
415
fastq
415
tsv
150
bed narrowPeak
69
bigBed narrowPeak
41
zippedFastqFolder
29
bed bed3+
19
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
408
Homo sapiens
Biosample type
226
primary cell
189
tissue
Organ
464
liver
415
pancreas
225
epithelium
99
connective tissue
60
blood
60
bodily fluid
42
adipose tissue
27
embryo
23
spleen
20
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
356
AMP
59
HPAP
Genome assembly (visualization)
320
GRCh38
318
hg19
Lab
350
AMP-T2D consortium
59
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
assay_title!
snDrop-seq
ATAC-seq
BIOSAMPLE
ASSAY
415 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
12
6
pancreatic beta cell
21
13
12
pancreatic ductal cell
4
13
9
pancreatic endocrine cell
23
pancreatic acinar cell
4
8
9
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tissue
islet of Langerhans
103
28
1
1
body of pancreas
33
2
2
pancreas
16
2
1
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