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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
89
total RNA-seq
12
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
189
DNA binding
89
Transcription
17
DNA accessibility
2
DNA methylation
Target of assay
109
histone modification
108
histone
54
broad histone mark
53
narrow histone mark
47
transcription factor
33
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
304
fastq
297
bam
286
bigWig
154
bed narrowPeak
99
tagAlign
89
tsv
48
bigBed narrowPeak
45
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
290
Homo sapiens
Biosample type
185
tissue
58
primary cell
54
in vitro differentiated cells
Organ
172
pancreas
72
connective tissue
29
epithelium
26
liver
18
adipose tissue
9
brain
1
spleen
Project
297
AMP
Genome assembly (visualization)
264
hg19
262
GRCh38
Lab
297
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
297 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
pancreas
14
white adipose tissue
12
brain
8
+ See 7 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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