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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
665
total RNA-seq
84
RNA microarray
single cell RNA-seq
27
snATAC-seq
22
ATAC-seq
8
ChIP-seq
6
WGBS
snDrop-seq
2
pCHi-C
Assay category
665
Transcription
49
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
694
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
105
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
Available data
688
bam
667
bigWig
667
tsv
84
txt
35
fastq
23
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
814
Homo sapiens
Biosample type
656
tissue
96
cell line
36
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
152
pancreas
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
8
skeleton
6
limb
2
liver
Project
781
AMP
33
HPAP
Genome assembly (visualization)
690
hg19
684
GRCh38
Lab
781
AMP-T2D consortium
33
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
27
audit script error
1
inconsistent replicate
assay_title!
snDrop-seq
single cell RNA-seq
BIOSAMPLE
ASSAY
814 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
ChIP-seq
WGBS
pCHi-C
tissue
adipose tissue
381
islet of Langerhans
120
bone element
84
bone tissue
58
visceral abdominal adipose tissue
3
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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