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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
151
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
191
DNA accessibility
151
DNA binding
1
3D chromatin structure
Target of assay
111
histone
111
histone modification
66
broad histone mark
45
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
Date released
712
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
339
bam
307
bed narrowPeak
307
bigBed narrowPeak
307
bigWig
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
1
bedpe
1
fastq
1
hic
Organism
343
Homo sapiens
Biosample type
283
tissue
60
primary cell
Organ
86
kidney
58
brain
57
vasculature
56
heart
55
blood vessel
50
musculature of body
39
limb
25
epithelium
18
connective tissue
18
ureter
11
pancreas
7
artery
7
eye
2
liver
1
adipose tissue
Project
343
AMP
Genome assembly (visualization)
308
GRCh38
287
hg19
Lab
338
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
29
inconsistent ontology term
assay_title!
snDrop-seq
BIOSAMPLE
ASSAY
343 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
muscle of leg
13
7
heart
18
ascending aorta
1
16
muscle of arm
17
thoracic aorta
16
+ See 41 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
kidney epithelial cell
1
5
cardiac muscle cell
1
3
+ See 17 more…
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