Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
snATAC-seq
60
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
88
DNA binding
60
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
152
May, 2021
113
May, 2022
97
February, 2023
59
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
Available data
196
bigWig
186
bam
142
fastq
132
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
558
Homo sapiens
Biosample type
472
primary cell
77
tissue
11
cell line
2
stem cell
Organ
176
pancreas
156
epithelium
47
kidney
9
lung
1
bone element
bone marrow
1
connective tissue
1
thymus
Project
AMP
276
HPAP
225
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
197
GRCh38
189
hg19
Lab
276
Klaus Kaestner, Upenn
217
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
3
audit script error
assay_title!
snDrop-seq
snATAC-seq
organ_slims!
bone marrow
award.project!
AMP
BIOSAMPLE
ASSAY
562 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
1
Langerhans cell
85
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 35 more…
tissue
kidney
47
islet of Langerhans
7
2
11
lung
9
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download