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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
35
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
vcf
Organism
37
Homo sapiens
Biosample type
33
cell line
4
tissue
Organ
30
liver
4
pancreas
2
kidney
Project
37
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3909
AMP-T2D consortium
342
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
organ_slims!
bone marrow
files.file_type!
vcf
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
18
9
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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