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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
249
ChIP-seq
66
DNase-seq
19
total RNA-seq
11
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
249
DNA binding
78
DNA accessibility
26
Transcription
7
3D chromatin structure
3
DNA methylation
Target of assay
212
histone
212
histone modification
124
narrow histone mark
88
broad histone mark
37
control
3
RNA binding protein
3
transcription factor
Date released
113
October, 2019
91
November, 2017
62
June, 2019
35
May, 2019
23
July, 2019
16
October, 2017
14
February, 2020
6
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
315
bam
282
bigWig
268
bed narrowPeak
185
bigBed narrowPeak
118
tagAlign
81
bed broadPeak
72
bigBed broadPeak
69
bed bed3+
28
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
365
Homo sapiens
Biosample type
344
tissue
21
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
351
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
365
AMP
Genome assembly (visualization)
282
GRCh38
229
hg19
Lab
365
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
snDrop-seq
organ_slims!
nerve
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
WGBS
tissue
brain
20
14
1
1
1
tibial artery
23
2
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
+ See 89 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
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