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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
305
Transcription
Target of assay
3
control
Date released
106
August, 2021
47
September, 2023
40
September, 2020
34
May, 2022
19
July, 2019
18
February, 2021
11
July, 2018
10
April, 2018
9
April, 2020
3
December, 2019
3
May, 2023
2
June, 2018
1
February, 2023
1
November, 2018
1
September, 2018
Available data
147
tsv
59
fastq
52
zippedFastqFolder
42
bam
42
bigWig
13
txt
8
csv
Organism
305
Homo sapiens
Biosample type
188
tissue
115
primary cell
2
in vitro differentiated cells
Organ
94
heart
pancreas
70
epithelium
65
kidney
9
lung
7
brain
7
connective tissue
6
blood vessel
6
vasculature
4
liver
3
adipose tissue
3
musculature of body
2
artery
Project
164
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
153
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
assay_title!
snDrop-seq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
305 results
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single cell RNA-seq
small RNA-seq
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 23 more…
primary cell
Langerhans cell
85
pancreatic cell
9
mesenchymal cell
6
cerebellar granule cell
2
endothelial cell
2
+ See 7 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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