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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
9
ChIP-seq
4
ATAC-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
9
DNA binding
4
DNA accessibility
Target of assay
9
control
Date released
196
February, 2021
8
February, 2023
5
October, 2019
2
August, 2021
2
February, 2020
2
July, 2019
2
May, 2019
1
May, 2021
Available data
168
bam
143
bigWig
116
tsv
88
txt
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
218
Homo sapiens
Biosample type
161
tissue
54
cell line
3
primary cell
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
168
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
217
AMP
1
T1D
Genome assembly (visualization)
116
hg19
112
GRCh38
Lab
217
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
snDrop-seq
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
218 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial artery
1
5
coronary artery
1
2
acetabular part of hip bone
1
1
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cell line
smooth muscle cell of the coronary artery
52
2
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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