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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
Assay category
196
DNA binding
Target of assay
295
histone
295
histone modification
narrow histone mark
133
broad histone mark
58
control
5
transcription factor
Date released
52
November, 2017
46
August, 2017
44
May, 2021
23
May, 2020
12
October, 2017
9
October, 2019
8
February, 2021
2
August, 2021
Available data
2737
bam
2510
bigWig
1466
tsv
1296
bed narrowPeak
1140
fastq
881
bigBed narrowPeak
292
bed broadPeak
270
bigBed broadPeak
239
bed bed3+
196
tagAlign
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
191
Homo sapiens
Biosample type
128
tissue
53
primary cell
in vitro differentiated cells
15
cell line
Organ
64
brain
46
liver
10
musculature of body
10
pancreas
6
artery
6
blood vessel
6
heart
6
vasculature
5
adipose tissue
5
connective tissue
2
epithelium
Project
152
AMP
44
T1D
Genome assembly (visualization)
101
GRCh38
87
hg19
Lab
152
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent assembly
assay_title!
snDrop-seq
target.investigated_as!
narrow histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
tissue
liver
37
brain
12
caudate nucleus
10
layer of hippocampus
10
skeletal muscle tissue
10
+ See 15 more…
primary cell
monocyte
44
skeletal muscle myoblast
7
hepatocyte
2
cell line
HepG2
7
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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