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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
73
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
73
DNA binding
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
56
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
March, 2020
Available data
42
bam
41
fastq
24
bigWig
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
84
Homo sapiens
Biosample type
83
tissue
1
in vitro differentiated cells
1
primary cell
Organ
573
liver
370
pancreas
270
epithelium
232
brain
204
heart
176
connective tissue
131
kidney
117
vasculature
113
blood vessel
85
adipose tissue
85
bone element
71
limb
60
blood
60
bodily fluid
55
musculature of body
36
artery
35
nerve
23
embryo
23
spleen
19
vein
10
eye
10
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
23
GRCh38
22
hg19
Lab
85
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
1
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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