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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
total RNA-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
1
pCHi-C
Assay category
99
DNA binding
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
41
October, 2019
6
August, 2021
6
February, 2021
4
July, 2019
3
March, 2020
3
November, 2017
Available data
101
bam
79
bigWig
73
bed narrowPeak
69
bigBed narrowPeak
7
tsv
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
113
Homo sapiens
Biosample type
83
tissue
24
primary cell
6
cell line
Organ
573
liver
370
pancreas
270
epithelium
232
brain
204
heart
176
connective tissue
131
kidney
117
vasculature
113
blood vessel
85
adipose tissue
85
bone element
71
limb
60
blood
60
bodily fluid
55
musculature of body
36
artery
35
nerve
23
embryo
23
spleen
19
vein
10
eye
10
lung
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
113
AMP
Genome assembly (visualization)
81
hg19
74
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial artery
23
aorta
13
4
1
2
1
ascending aorta
16
thoracic aorta
16
coronary artery
5
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
brain microvascular endothelial cell
3
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
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