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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
total RNA-seq
19
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
106
Transcription
82
DNA accessibility
19
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
328
November, 2017
235
October, 2019
222
August, 2017
221
August, 2021
218
June, 2019
156
February, 2021
133
May, 2022
126
May, 2021
120
May, 2019
112
February, 2023
101
May, 2020
94
December, 2017
81
November, 2018
80
April, 2019
74
October, 2018
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
37
July, 2019
35
December, 2018
25
January, 2019
24
February, 2018
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
9
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
106
bed narrowPeak
98
tsv
64
xls
34
bam
32
bigWig
tagAlign
8
txt
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
220
Homo sapiens
Biosample type
179
tissue
27
cell line
15
in vitro differentiated cells
Organ
92
heart
81
kidney
22
liver
6
blood vessel
6
vasculature
5
connective tissue
3
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
221
AMP
Genome assembly (visualization)
74
GRCh38
30
hg19
Lab
112
AMP-T2D consortium
79
Katalin Susztak, Upenn
26
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
total RNA-seq
assay_slims!
DNA methylation
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
221 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
1
adipocyte
1
1
osteoblast
1
1
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