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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
867
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
867
DNA binding
210
DNA accessibility
190
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
204
October, 2019
193
August, 2017
163
June, 2019
115
August, 2021
115
May, 2019
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
47
September, 2023
40
July, 2019
29
March, 2020
26
November, 2018
19
April, 2020
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
4
November, 2020
3
December, 2019
3
February, 2023
3
May, 2023
2
May, 2022
1
August, 2022
1
March, 2019
1
May, 2021
1
November, 2019
Available data
936
bam
788
bigWig
736
bed narrowPeak
558
bigBed narrowPeak
245
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
144
tsv
98
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1431
Homo sapiens
Biosample type
1440
tissue
641
primary cell
520
cell line
216
in vitro differentiated cells
10
stem cell
Organ
244
brain
219
heart
174
kidney
170
liver
154
pancreas
107
limb
88
blood vessel
88
vasculature
86
connective tissue
85
adipose tissue
84
bone element
76
musculature of body
37
nerve
34
artery
24
spleen
20
lung
18
ureter
9
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
1361
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
759
GRCh38
731
hg19
Lab
1339
AMP-T2D consortium
47
KPMP
19
Xin Sun, UCSD
18
Katalin Susztak, Upenn
11
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
ATAC-seq
BIOSAMPLE
ASSAY
1440 results
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ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
liver
145
2
1
3
1
1
1
1
kidney
27
13
64
6
1
1
1
islet of Langerhans
71
1
7
4
3
1
1
4
bone element
84
heart left ventricle
35
3
18
4
1
1
1
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