Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
173
DNA accessibility
76
Transcription
53
DNA methylation
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
98
May, 2022
37
July, 2018
33
April, 2018
22
November, 2019
16
May, 2021
14
February, 2023
14
September, 2018
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
February, 2021
6
March, 2020
5
August, 2017
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
August, 2021
3
October, 2022
3
September, 2020
1
August, 2022
1
June, 2018
Available data
155
bam
140
fastq
132
bigWig
85
tsv
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
3
cool
1
bedpe
1
hdf5
Organism
324
Homo sapiens
Biosample type
195
primary cell
99
tissue
31
cell line
Organ
325
pancreas
264
epithelium
242
kidney
187
heart
97
bone element
73
vasculature
70
blood vessel
57
connective tissue
51
artery
51
brain
51
musculature of body
50
liver
49
limb
37
eye
20
adipose tissue
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
205
AMP
99
HPAP
21
T1D
Genome assembly (visualization)
165
hg19
148
GRCh38
Lab
170
AMP-T2D consortium
99
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
assay_title!
total RNA-seq
ChIP-seq
BIOSAMPLE
ASSAY
325 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
35
12
31
1
pancreatic beta cell
23
12
16
1
pancreatic acinar cell
9
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 4 more…
tissue
islet of Langerhans
58
7
4
3
1
1
1
body of pancreas
4
2
4
2
pancreas
2
4
1
2
1
1
1
cell line
EndoC_BH1
19
6
1
2
1
Panc1
1
1
See all biosamples
Download