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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
total RNA-seq
527
ATAC-seq
366
single cell RNA-seq
180
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
55
pCHi-C
31
Hi-C
19
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
DNA methylation
1
DNA sequencing
Date released
13
July, 2019
6
August, 2017
1
August, 2021
Available data
17
bed bedMethyl
17
bigBed bedMethyl
4
fastq
1
vcf
Organism
20
Homo sapiens
Biosample type
10
tissue
9
primary cell
1
cell line
Organ
6
epithelium
5
musculature of body
4
kidney
3
liver
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
20
AMP
Genome assembly (visualization)
17
hg19
Lab
19
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
total RNA-seq
organ_slims!
brain
BIOSAMPLE
ASSAY
20 results
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RRBS
whole genome sequencing assay
tissue
skeletal muscle tissue
4
heart left ventricle
1
islet of Langerhans
1
kidney
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
cell line
HepG2
1
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