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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
123
DNA accessibility
70
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
33
April, 2018
33
July, 2018
16
May, 2021
14
June, 2019
14
September, 2018
13
February, 2023
8
July, 2019
8
October, 2019
7
August, 2020
6
February, 2021
6
November, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
March, 2020
3
October, 2022
3
September, 2020
2
August, 2021
2
November, 2019
1
December, 2019
1
June, 2018
Available data
124
bigWig
112
bam
104
fastq
80
zippedFastqFolder
78
tsv
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
263
Homo sapiens
Biosample type
221
primary cell
30
cell line
13
tissue
Organ
331
pancreas
264
epithelium
242
kidney
187
heart
97
bone element
73
vasculature
70
blood vessel
57
connective tissue
51
artery
51
brain
51
musculature of body
50
liver
49
limb
37
eye
20
adipose tissue
20
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
165
AMP
99
HPAP
Genome assembly (visualization)
134
hg19
121
GRCh38
Lab
159
AMP-T2D consortium
99
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
32
inconsistent ontology term
5
audit script error
assay_title!
total RNA-seq
ChIP-seq
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
264 results
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ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
35
12
31
1
pancreatic beta cell
23
12
16
1
pancreatic acinar cell
9
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
19
1
6
2
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
renal glomerulus
1
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