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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
25
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
25
DNA binding
19
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
17
May, 2021
15
November, 2019
10
October, 2019
6
November, 2020
5
March, 2020
3
August, 2021
Available data
26
bam
22
bigWig
21
bed narrowPeak
3
tsv
1
bedpe bed3+
1
hic
Organism
56
Homo sapiens
Biosample type
90
tissue
56
cell line
50
primary cell
26
in vitro differentiated cells
1
stem cell
Organ
43
epithelium
43
pancreas
12
kidney
Project
54
AMP
2
T1D
Genome assembly (visualization)
24
hg19
21
GRCh38
Lab
49
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
56
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
56 results
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ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
15
19
6
2
1
RCC 7860 HIF1a re-expression
4
RCC 7860 vector
3
1
RCC 7860 HIF2a over-expression
3
RCC 7860 VHL
1
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