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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
total RNA-seq
27
ChIP-seq
17
single cell RNA-seq
13
DNase-seq
6
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
95
DNA accessibility
27
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
79
August, 2021
23
April, 2019
14
May, 2023
13
June, 2019
5
February, 2021
4
October, 2019
2
July, 2019
1
December, 2019
Available data
98
bed narrowPeak
64
xls
41
bam
34
bigWig
32
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
13
txt
5
csv
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
141
Homo sapiens
Biosample type
141
tissue
Organ
141
kidney
Project
141
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
36
hg19
Lab
93
Katalin Susztak, Upenn
48
AMP-T2D consortium
Audit category:
5
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
141 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
snATAC-seq
FAIRE-seq
Hi-C
RRBS
tissue
kidney
75
27
17
13
6
1
1
1
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