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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
189
Transcription
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
237
histone
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
100
May, 2020
48
July, 2018
47
February, 2021
43
April, 2018
43
September, 2020
36
June, 2019
33
May, 2021
21
August, 2017
18
July, 2019
15
September, 2018
12
February, 2023
11
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
November, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
256
bam
231
bigWig
216
fastq
153
zippedFastqFolder
120
tsv
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
604
Homo sapiens
Biosample type
1107
tissue
604
primary cell
511
cell line
146
in vitro differentiated cells
8
stem cell
Organ
247
epithelium
207
pancreas
21
connective tissue
20
kidney
18
brain
18
vasculature
13
blood vessel
8
blood
8
bodily fluid
7
heart
7
vein
6
liver
5
musculature of body
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
347
AMP
232
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
246
hg19
188
GRCh38
Lab
344
AMP-T2D consortium
232
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
1
ITG
Audit category:
33
inconsistent ontology term
31
audit script error
assay_title!
total RNA-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
604 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
31
6
1
pancreatic beta cell
23
12
16
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
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